rs32139609 SNP Detail

Summary

• ID
  rs32139609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:139534376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTGACAC AAACCAAATA GATAATTTCA CTAGCTTAAC
  TAAAAATGAG TACTGATGGA CTGATGAGGG GTTACTTACA GCAACATAGA TGACGTGAAA
  Y
  CAACAGCAGC AGTAATCATC CCACAAAATA CAGCTAATTC CTCAGGAATC CTGCTTCCAG
  GAGCTCTCTC CGTGACTCAT AGGCAGTTGA GCTGTCTAGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48129663	NES11841864	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32139609					SNP	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48129663	NES11841864	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:139534376 () rs orientation: forward

Symbol	Name	Function Class
4930404I20Rik	RIKEN cDNA 4930404I20 gene	within coordinates
Gm67453	predicted gene, 67453	338 bp upstream