rs32142209 SNP Detail

Summary

• ID
  rs32142209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115106521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTGAGGT GTCTGCCGTG GCCTCACACA TGATGCAAAA
  GGGGTGGGGG TGGGATCCGA GACCCCAGAC CCACCTCTCC CTCTCCCAAA GGTAGACCTT
  R
  GAATCAACAG TTCCCGTGGG GAGTTAGTCC TTCCCACCGC CTCTTCCAGC CTCAACTTCC
  CCACTAGCCA GGCCCTCATG GGGGTCCTCC AGCCCTCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321653987	CHEV_5_115418471	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs32142209					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115106521 () rs orientation: forward

Symbol	Name	Function Class
Gm71622	predicted gene, 71622	within coordinates
Hnf1a	HNF1 homeobox A	within coordinates
Hnf1aos1	HNF1 homeobox A, opposite strand 1	281 bp upstream
Hnf1aos2	HNF1 homeobox A, opposite strand 2	361 bp upstream
Rr124128	regulatory region 124128	within coordinates
Rr618078	regulatory region 618078	1854 bp distal
Rr618079	regulatory region 618079	1718 bp distal
Rr618080	regulatory region 618080	244 bp distal
Rr618081	regulatory region 618081	within coordinates
Rr618082	regulatory region 618082	939 bp proximal
Tssr48194	transcription start site region 48194	297 bp upstream
Tssr48195	transcription start site region 48195	327 bp upstream
Tssr48196	transcription start site region 48196	366 bp upstream
Tssr48197	transcription start site region 48197	1408 bp upstream