rs32142478 SNP Detail

Summary

• ID
  rs32142478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135798314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    cccatgggc tgttaagcta aagctagaat
  gaaacaggac ttagcgttgg caccgttaca ggaagttcaa aatgaccaag ctaaaatata
  gtcttagaag ttcagacagt gccgtgtttt ccttggggtg ggatggaagc aggagaggca
  Y
  gaggaaggct ccccggctgg tcctgtacca tttcttggag agggtgctgT TCAGAACCTC
  TTCAAAGAGG TTCAGAGCTG TGTCCATTTC AAGCTGTGTG ATTTTGATCT CCAATTGTAT
  TTTGATGGAA ATATGAGGTA ACACTTAATG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss45111632	mCV23239163	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss145548812	ENSMUSSNP6443472	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss319993915	CHEV_1_137767153	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs32142478					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135798314 () rs orientation: forward

Symbol	Name	Function Class
Gm28883	predicted gene 28883	426 bp downstream
Pkp1	plakophilin 1	819 bp downstream
Tssr13903	transcription start site region 13903	1311 bp downstream