rs32142503 SNP Detail

Summary

• ID
  rs32142503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162399639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCTTTTGC TGTTAGCTAA GATCAATATC
  TGTTATCAGC CAGTTGTTTC TTTTGGGCTG TCAAGGATAT AAATATATCG TCCAGATACA
  GTTTAAATCT CATTTTCTCC AGTTCTTGCC TTATCAACTT TTTCCCGGTG CATTCTGTAA
  Y
  ATTTCTGCAT GAAATTTATT CTGAGATTAA GATGTAAGGA ATAAAATGGG CCAGATGATT
  CTAACGGAAG TAATGTGGAA TAAAGACCCC CAGGGCTGTG ACTCATGCAT GGATGGATAG
  CAGCTATGTT ATAAGTGAAG TTGTTAGTTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45111931	mCV22812909	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss145939917	ENSMUSSNP5412194	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320082941	CHEV_1_164502201	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32142503					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162399639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi932	CpG island 932	457 bp distal
Rr396472	regulatory region 396472	1365 bp downstream
Rr396473	regulatory region 396473	628 bp downstream
Rr421988	regulatory region 421988	834 bp distal
Rr421989	regulatory region 421989	1523 bp distal
Rr421990	regulatory region 421990	1455 bp distal
Rr421991	regulatory region 421991	190 bp distal
Tssr9715	transcription start site region 9715	1414 bp downstream
Tssr9716	transcription start site region 9716	1398 bp downstream
Tssr9717	transcription start site region 9717	1315 bp downstream
Tssr9718	transcription start site region 9718	429 bp downstream
Tssr14622	transcription start site region 14622	1748 bp upstream
Tssr14623	transcription start site region 14623	705 bp upstream
Tssr14624	transcription start site region 14624	695 bp upstream
Tssr14625	transcription start site region 14625	662 bp upstream
Tssr14626	transcription start site region 14626	628 bp upstream
Tssr14627	transcription start site region 14627	583 bp upstream
Tssr14628	transcription start site region 14628	565 bp upstream
Tssr14629	transcription start site region 14629	530 bp upstream
Vamp4	vesicle-associated membrane protein 4	within coordinates