rs32144201 SNP Detail

Summary

• ID
  rs32144201
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115117680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCAG GTGCTGTTAG GAGACAATCT
  K
  GTTCTCACAA GCCAAGAGCT CGGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321653999	CHEV_5_115429630	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs32144201					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115117680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16346	CpG island 16346	201 bp distal
Gm71622	predicted gene, 71622	within coordinates
Gm71625	predicted gene, 71625	within coordinates
Hnf1aos1	HNF1 homeobox A, opposite strand 1	within coordinates
Rr618085	regulatory region 618085	within coordinates
Rr618086	regulatory region 618086	593 bp distal
Rr618087	regulatory region 618087	211 bp distal
Rr618088	regulatory region 618088	797 bp proximal