rs32147090 SNP Detail

Summary

• ID
  rs32147090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:4023740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG GTCCTTCTTA TAAGTCTATG
  Y
  AGGACAATAT CATACTGTTA AGAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39367978	mCV23812973	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	T
ss147038810	ENSMUSSNP704614	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32147090					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:4023740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6911	CpG island 6911	1103 bp proximal
Gm2093	predicted gene 2093	1781 bp upstream
Rimoc1	RAB7A interacting MON1-CCZ1 complex subunit 1	Intron
Rr369897	regulatory region 369897	832 bp upstream
Rr498628	regulatory region 498628	425 bp proximal
Rr498629	regulatory region 498629	1476 bp proximal
Rr498630	regulatory region 498630	1790 bp proximal
Tssr133595	transcription start site region 133595	986 bp downstream
Tssr133596	transcription start site region 133596	1450 bp downstream