rs32149254 SNP Detail

Summary

• ID
  rs32149254
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135763194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACTAAAGG AGACCAGGAA AGAAGAGATG
  GCAGGGGCTG GACGAATCTG GTTTACTCGG TGTGAACGAG AGACGGAATC TAACAGTGTC
  TGGAAGCGTC AAGGGATCTC AGGGCTTGGG GCGCCTGGAA AGTTGGGCCT GGTTGGTGGT
  M
  GTACATGTCC TTCAGATTCT GCTGGGACCT GCTGAGAAGA CTGGAATGGA GAGAGCCAGC
  TGCCCCCTAA CTTAGTTTCC TTTTAGTTCT CATCACCCCc tgagccccac cttgtgccag
  tcactctgtg tgggctggtg gacataaatg                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45112516	mCV24740893	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A	C
ss145547944	ENSMUSSNP6956271	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		C
ss319993817	CHEV_1_137732033	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32149254					SNP	C	C	A	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135763194 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	593 bp distal
Rr419293	regulatory region 419293	1029 bp distal
Rr419294	regulatory region 419294	408 bp proximal
Rr419295	regulatory region 419295	968 bp proximal
Rr419296	regulatory region 419296	1436 bp proximal
Tnnt2	troponin T2, cardiac	898 bp upstream
Tssr9005	transcription start site region 9005	924 bp upstream