rs32157417 SNP Detail

Summary

• ID
  rs32157417
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:35702567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAGAGTC CTATATTTTT
  TTCCACCAAA CTATCCATTT TTAAGCCACA AATGTTTTCC CATCTCTTCC AGATTTTATC
  TAAAAGTATA TTTTAACAAT ATTTTAAAAG TTCTTAAACA ATAACAATTT ATCTTGATGG
  ATGGCATGCT GTGGTTTTTT TTTTCATTTT ATTTTAATTA GCCATTGAGG AACCAAATTC
  Y
  CTTTTGTCTT TAGTATTTGG AATATTGTTT AATTATTGTT ATCATGCCAG ATATCTTAAA
  GGTTATTTTA CCAATACAGT TTCATTTAAC ATAACCCATA TGGAATCAAT AGTCTAGTTT
  CCTAAAGTGA ATGCTTGGAA ACTCTTACAT TCATATGTTA AGAGTACACA TCCTTTCCTC
  ATTAGTTGGA AAGTACAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss39369419	mCV23384073	ABI	CRAMUS_MOUSE	f	SNP		T	C			C		C
ss51633313	NES14588592	PERLEGEN	MM_PANEL2	f	SNP	T			C	T		C		T	T	T	C	C
ss147580851	ENSMUSSNP239881	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs32157417					SNP	T	T	C	C	T	C	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51633313	NES14588592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:35702567 () rs orientation: forward

Symbol	Name	Function Class
Rr647	regulatory region 647	within coordinates
Rr309492	regulatory region 309492	1003 bp distal
Vps13b	vacuolar protein sorting 13B	within coordinates