rs32157554 SNP Detail

Summary

• ID
  rs32157554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110675880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCCAGAA AAGGTGGAAC
  AGGGAAGAAT ATCTAACATA TCTGTTGAAT AAAGTGATGT GATTTTACTA ATCTTAAGGA
  TAAGCATCTT ACTCAATTTC AAACAACTGT CAAATGGAAA TATGCTAAGG AAAAAAAAGC
  ATAAGAACTC AGCTTCATTT AAAAACAATA AAGGGCAAAA GGTATTATAC CTAAGGCTGG
  Y
  CCTAACACTA TCAATATCTT ACCTGGCTTT TCATAAACTT GCCCCCCATC TCTCCAAACT
  GCGATTGCGT GGGAGGCATG ATGTGCCCCC CATGGCCATT GAAGAGCTGA TTTGAACGAT
  GACGTCCCAT TGTGGGTGAA AATCTATCCT GGATAACTCC TGGACCAGTA CCAATTCCAC
  TACCTTAAAA TACAGACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47132804	NES11601294	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C	C	T		C
ss322401253	CHEV_7_118220187	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32157554					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47132804	NES11601294	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110675880 () rs orientation: forward

Symbol	Name	Function Class
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Gm23262	predicted gene, 23262	446 bp upstream
Tssr74284	transcription start site region 74284	1928 bp upstream
Tssr74285	transcription start site region 74285	1835 bp upstream
Tssr74286	transcription start site region 74286	1004 bp upstream
Tssr74287	transcription start site region 74287	497 bp upstream
Tssr74288	transcription start site region 74288	479 bp upstream
Tssr74289	transcription start site region 74289	442 bp upstream
Tssr74290	transcription start site region 74290	275 bp upstream
Tssr74291	transcription start site region 74291	1448 bp downstream
Tssr74292	transcription start site region 74292	1831 bp downstream
Tssr74293	transcription start site region 74293	1883 bp downstream