rs32157557 SNP Detail

Summary

• ID
  rs32157557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110677017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATCTTTGA GTTGGACTCT CTTCTTCTTT TCCAAAAGCT
  ACCAAAAGAA CATGTTTACG ATCATTGTTA CTCTTGCTTA TGTAGTTTTT CCTCTTTAGA
  Y
  TTGGACTGAC TCATTTGCAA TTCCTAAAGC ACGTGAGACA ATGGTTTCCT ACCAGTTTTC
  ATTGAAGAAA CCCTCTAAGA ATGTTAACAC AGGCAATCTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47132807	NES11601296	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32157557					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47132807	NES11601296	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110677017 () rs orientation: forward

Symbol	Name	Function Class
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Gm23262	predicted gene, 23262	1583 bp upstream
Tssr74287	transcription start site region 74287	1634 bp upstream
Tssr74288	transcription start site region 74288	1616 bp upstream
Tssr74289	transcription start site region 74289	1579 bp upstream
Tssr74290	transcription start site region 74290	1412 bp upstream
Tssr74291	transcription start site region 74291	311 bp downstream
Tssr74292	transcription start site region 74292	694 bp downstream
Tssr74293	transcription start site region 74293	746 bp downstream
Tssr74294	transcription start site region 74294	1506 bp downstream