rs32157563 SNP Detail

Summary

• ID
  rs32157563
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110677431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTTTGAT GCACTTATGA
  AGGATAGATT CATGAATAAG ATCAAGCTTG CCAAGTTCTC CAATGAATTT GATGTTCCCC
  AACATCTTGA TCTTAGCAAT GGCTCTCTGT TCCTCCTCCT CAGGAAGGAG GGGATTTTCA
  CGCTTATCAT AGACTGAGGG AAGGGAGGCA AACAAAATAA AGAACACTTA GGCCATGAAA
  K
  GTGTGTACGC ACACATAAAA CTACCCAAGA GCAAATTTAA ATTCTTACCA TCAACATTTC
  TGGTTCGGTT TTCAAATTCA TCTTGCAATT TGGAAATCAA GAGGCGTCTG AATGTCTATT
  TGAAAACAAA AAGTATTTGT AAAAAGAAAA AAAATTTCAA ATTAATTTCA AAACAAAGAA
  AAAAAACTGT CACTCACTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47132813	NES11601298	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G		T	G	G	T		G
ss322401258	CHEV_7_118221738	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32157563					SNP	G	G	G	G	G	G	T	G	G	G	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47132813	NES11601298	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110677431 () rs orientation: forward

Symbol	Name	Function Class
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Gm23262	predicted gene, 23262	1997 bp upstream
Rr159269	regulatory region 159269	1431 bp distal
Rr166519	regulatory region 166519	1569 bp proximal
Rr166520	regulatory region 166520	1969 bp proximal
Rr168547	regulatory region 168547	1831 bp distal
Tssr68538	transcription start site region 68538	1951 bp upstream
Tssr74289	transcription start site region 74289	1993 bp upstream
Tssr74290	transcription start site region 74290	1826 bp upstream
Tssr74291	transcription start site region 74291	85 bp upstream
Tssr74292	transcription start site region 74292	280 bp downstream
Tssr74293	transcription start site region 74293	332 bp downstream
Tssr74294	transcription start site region 74294	1092 bp downstream