rs32157789 SNP Detail

Summary

• ID
  rs32157789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110677931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGCTCT TCTAAGGCTT
  TGTCCACAAT CTACAGAAGT CATTAAAAAA CAAACCACCA TGAACTAGAA GCTGAAATAG
  CCTCCCTTTA AACAGTCATA CTCTTACTTT TCACAACAAG TTACAATCTC AATTAATGTT
  TACTCTTACA TTTCACAAGT TACAATCTCA ATTAATTTGG ACAACTCAGG AAAAAAAAAC
  R
  CACTTTTAAG CTTTAAAAAT TTACTATGTC TGGTACAATA GACTAGATCT CATGTTATAT
  ACCTCCTCCC CAATTAGAAA TGAACTATAA ATCATAAAAT GCTGGATTTG GGATCCAACT
  CTGTGGTAGT CATGCAAAAT AAGATGCCAG AATTCAGTAT ACCATAAAAT TCCCAAAACC
  ACTTTTACTA AAGGAAAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47132819	NES11601300	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G		G	G	G	A		G
ss322401261	CHEV_7_118222238	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32157789					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47132819	NES11601300	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110677931 () rs orientation: forward

Symbol	Name	Function Class
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Rr159269	regulatory region 159269	1931 bp distal
Rr166519	regulatory region 166519	1069 bp proximal
Rr166520	regulatory region 166520	1469 bp proximal
Tssr2372	transcription start site region 2372	1593 bp downstream
Tssr68538	transcription start site region 68538	1451 bp upstream
Tssr74291	transcription start site region 74291	585 bp upstream
Tssr74292	transcription start site region 74292	169 bp upstream
Tssr74293	transcription start site region 74293	156 bp upstream
Tssr74294	transcription start site region 74294	592 bp downstream
Tssr74295	transcription start site region 74295	1565 bp downstream