rs32158517 SNP Detail

Summary

• ID
  rs32158517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131650244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTGTGGT GGCAGCAGCC
  GCCAAGGCTG CTGACCTGCA TGTGTAGCAG TGCCAGCTGC ACCGAACGAG CTCCAGGGGC
  ATGTGTTAAT GTGGACACCA GCATGATTCA GCCTCAGGAA TTTCTTCAGC CCATGTGGCC
  TTAGCCCAGG ACCGGCACCT GAAGGGCTGC AGGGTAGGCC AAGAGCACCG TGAGATGCAC
  R
  GGGTTCCTTG GCAAACAACA GTGGTAGGTT GGGATGTCCC AGGCTGGGAC AGGCTCCGTC
  TAAGTTGGTA GTCCTGGTGG AAATGGGACC ACCGGGGGAA GGTGGGCGAT GAGGTGGAAT
  GAGACCCTCT GCAGCTGTCT GGGGCAGTGA CCGCAACTCT AACTGCCACC ACCTCAGGTC
  TGTTCTTCCT TCAGTCAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45614218	mCV22797926	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss147471968	ENSMUSSNP1711565	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss321329103	CHEV_4_131478848	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32158517					SNP	G	G	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131650244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14947	CpG island 14947	within coordinates
Epb41	erythrocyte membrane protein band 4.1	480 bp downstream
Gm50475	predicted gene, 50475	1405 bp upstream
Rr85752	regulatory region 85752	1957 bp proximal
Rr100128	regulatory region 100128	within coordinates
Tmem200b	transmembrane protein 200B	within coordinates
Tssr1320	transcription start site region 1320	1239 bp downstream
Tssr39358	transcription start site region 39358	1773 bp downstream
Tssr39359	transcription start site region 39359	1726 bp downstream
Tssr39360	transcription start site region 39360	494 bp upstream
Tssr43617	transcription start site region 43617	1911 bp upstream