rs32158806 SNP Detail

Summary

• ID
  rs32158806
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131672133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTGAACCG GATCCTATGA GCAGCCCTCC
  AGTCCTTGTG GAGCGCACCA TAAAGACCTC AGCTGCTAGG GTGAGTTTCA CTGGAAGAAT
  ACACAGAATG GACTCTATTG GAGGAGCTCA AAGACACCCA GTCAGAGTCA GGCAAACAGG
  R
  CCTTCCAGGA AAAGGAATGG AGCTTGAACC TTTCTGAGCC ACCCCCTCCA CTTTCTACTT
  CTTTTCAAGT CCTGGAAGCA GAGAGCTAGC TCTTGGTGCA TCTCGAAGTG GCTGTGTCCC
  CGTCCTTCTG TCTCTACACC CTTTCCTTCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45113655	mCV23265306	ABI	CRAMUS_MOUSE	f	SNP		A	G					G	A
ss51365830	NES14471123	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G		A	G	G		A	G	G	A		A
ss145481810	ENSMUSSNP1395599	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss319975140	CHEV_1_133640972	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32158806					SNP	A	A	G	A	G	A	G	G	A	G	G	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51365830	NES14471123	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131672133 () rs orientation: forward

Symbol	Name	Function Class
Rr28486	regulatory region 28486	within coordinates
Slc26a9	solute carrier family 26, member 9	within coordinates
Tssr8660	transcription start site region 8660	366 bp downstream
Tssr8661	transcription start site region 8661	200 bp downstream