rs32164019 SNP Detail

Summary

• ID
  rs32164019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172330978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCGGAAAT ATGCAGCTGG ATAAACCCAG AGTTAGAAAG
  GAGCAGCCAT GTTGGAGGGT GGGGGAAGGG AGTGACCCAC CACACAACCT CTGCCCAGAC
  R
  TATGACATTA TTAGCAATGG ACTTATTAGC CTGGCTTCTT TGGCGGAGCA CCAGAGCCCA
  TTGAGGGGGT GGTGGGAGCG TTTAACCTGG GGTGCATGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45113839	mCV22750467	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss120011632	PARCsnp_1.19894	PARC_SEQ	INBRED	f	SNP			G	A
ss120014571	PARCsnp_1.09940	PARC_SEQ	INBRED	f	SNP			G	A
ss146193920	ENSMUSSNP5765730	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32164019					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172330978 () rs orientation: forward

Symbol	Name	Function Class
Rr29013	regulatory region 29013	within coordinates
Rr29014	regulatory region 29014	822 bp proximal
Tagln2	transgelin 2	within coordinates
Tssr10217	transcription start site region 10217	1422 bp downstream
Tssr10218	transcription start site region 10218	819 bp downstream
Tssr10219	transcription start site region 10219	1852 bp upstream
Tssr15225	transcription start site region 15225	1794 bp upstream