rs32166244 SNP Detail

Summary

• ID
  rs32166244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72324608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tactgaatg ctgggattaa aggcatggga
  taccatgccc tgcCCTTCTG TTTGTTCATT TAAAAATTAA CATTACATAt gtgtgtgtgt
  gtgtgtgtgt gtgtgtgtgt gtgtgtgtga gaagacgaat tgcaggagtc agttctcttc
  Y
  tgtaccgtat gggtgccacc agggattgaa ccccatcatc aagcgcagca gcagcagcct
  tgccctctta gctctttTCT GTTTATCTCT TTCCTTATGT CGGACTATGC TAGGTCATTG
  GTCTTAATCC AGGACAACAG TCTTTCTAAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45114259	mCV24093631	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss144651971	ENSMUSSNP3435798	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss319788277	CHEV_1_72332023	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs32166244					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72324608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	956 bp distal
Gm51631	predicted gene, 51631	1369 bp downstream
Pecr	peroxisomal trans-2-enoyl-CoA reductase	1135 bp upstream
Tmem169	transmembrane protein 169	within coordinates
Tssr114	transcription start site region 114	1170 bp upstream
Tssr115	transcription start site region 115	1156 bp upstream
Tssr116	transcription start site region 116	1136 bp upstream
Tssr7298	transcription start site region 7298	1030 bp downstream
Tssr12164	transcription start site region 12164	1221 bp upstream
Tssr12165	transcription start site region 12165	1183 bp upstream