rs32168507 SNP Detail

Summary

• ID
  rs32168507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:120768491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACTGAAG AGAGGAACTC
  ACATGGCCTG CAATCCTCCT CCCCTGCCCA CCTGGCTTGC CAACACACCC TGGGGGGGCT
  GTCCTCAGTC CAGGTGTGCC ATGGGACATC TCAGGCCCTG AAATGACCTT CCCTGTTCAT
  GTCCTTCCAC ACTCCATGAT CAAACCTAGC TAATTAAGCT GGCTAGACAC CACTTTGTTG
  Y
  TGACTGGGAG AACTTGGTGG CTGATGCCTG GAATGCCAGC ACTTGGGGAG GCTGAGGCAG
  GAGAGTTGCC TCAAGCTCAA GACCAGCCTC CACCACAGAT CAAGTACCTG GTTAGCCTGG
  GCTACAGAAT GGGACTCTGT CTCAACGACC CCCTCCCACA CCCCATCCCC CTGTGGAGCT
  GAGCATGGTG GCAGTGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366479315	MGP_WTSI_5_121080435	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs32168507					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366479315	MGP_WTSI_5_121080435	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:120768491 () rs orientation: forward

Symbol	Name	Function Class
Cfap73	cilia and flagella associated protein 73	Intron
Cpgi16507	CpG island 16507	300 bp distal
Cpgi16508	CpG island 16508	666 bp proximal
Ddx54	DEAD box helicase 54	1834 bp downstream
Gm72343	predicted gene, 72343	within coordinates
Rr619386	regulatory region 619386	1339 bp distal
Rr619387	regulatory region 619387	999 bp proximal
Rr619388	regulatory region 619388	1640 bp proximal
Tssr1621	transcription start site region 1621	655 bp upstream
Tssr48527	transcription start site region 48527	370 bp downstream
Tssr48528	transcription start site region 48528	349 bp downstream
Tssr48529	transcription start site region 48529	337 bp downstream
Tssr48530	transcription start site region 48530	325 bp downstream
Tssr52948	transcription start site region 52948	438 bp upstream
Tssr52949	transcription start site region 52949	407 bp upstream