rs32170225 SNP Detail

Summary

• ID
  rs32170225
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100308180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATTTTCT CATCAAAGTA
  GGTGGTGAAG GGCTCCTCAG AGTCTCCAGT GGAATGTGGG AGGGATGAGT TGCTGTAGGC
  AGGGTTGATG GCGCCAAGGC TGGCAGAGTC TCCATGGTCC CCAGAAGCGC CATCTGAGTC
  AACATAACAA ACCCACCAAG GAGCTTTCTC AGTGACGCTG AACTCCAGCC CTTCACCCTG
  R
  TGGACACCTG ACCCGCATCT GGTACTCGCT CCCTCCCCGT CACTGACAAC AACCTTAGGC
  CCAAAGCTAA ATCATCTTAC AGCTCTGTGC ACAAGAGACC ACCGTGGTTT TAGTACAGTG
  TGCCCTAAAC AGTTTATTCA TCAACATTGT AAATAAATGT ATGCATGTAT ACGTGTATAC
  ATTTACTTAG AGGATCTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48133925	NES12133112	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A	A	A	A	G	A	G
ss148475166	ENSMUSSNP4667581	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32170225					SNP	G	G	A	A	G	G	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48133925	NES12133112	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100308180 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	311 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	132 bp upstream