rs32170227 SNP Detail

Summary

• ID
  rs32170227
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100308232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTGGGAG GGATGAGTTG
  CTGTAGGCAG GGTTGATGGC GCCAAGGCTG GCAGAGTCTC CATGGTCCCC AGAAGCGCCA
  TCTGAGTCAA CATAACAAAC CCACCAAGGA GCTTTCTCAG TGACGCTGAA CTCCAGCCCT
  TCACCCTGAT GGACACCTGA CCCGCATCTG GTACTCGCTC CCTCCCCGTC ACTGACAACA
  R
  CCTTAGGCCC AAAGCTAAAT CATCTTACAG CTCTGTGCAC AAGAGACCAC CGTGGTTTTA
  GTACAGTGTG CCCTAAACAG TTTATTCATC AACATTGTAA ATAAATGTAT GCATGTATAC
  GTGTATACAT TTACTTAGAG GATCTAATAA GTAAAGACCA GCCGAGGCCC AGGATGACTC
  TGAACGTGAC CCCCTCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48133927	NES12133113	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A	G	A	G	G	A	G
ss148475169	ENSMUSSNP5770728	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32170227					SNP	G	G	A	A	G	G	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48133927	NES12133113	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100308232 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	259 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	184 bp upstream