rs32171197 SNP Detail

Summary

• ID
  rs32171197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100308776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGTCCGT GCACATGGTC
  GGAAATGGAC AGACAAGCAG ACTGTGGTAT AAGCCTGTTA CCCTGTCACC CGCTGGAGGT
  AAGGAAAGAG GAGGGAGTCG GCAGGGTCAG CCTGGGCTAG GGCTATACCT AGACCCTATC
  TCAAAGGAAA GAAAAAGAAG TTCAAAAGCC TCCAGGAGCG CTCTCGGTCT TAGGTCAGTT
  Y
  AATGTAACAT CTTACTAATC CTTTGAGAAT GTCATACAGT GCACTGGTCA CACTCGTCCC
  TGTGGGTCAC ACTCGTCCCT GTGTCTCCCT TTTTCTCCTG TCAGACCCAT GCCCTACCTC
  CTCCCAACTC TGTGTTTTCT CTGATCAGTG TCACAGTACT TTCCTTATTC TACACTTCTA
  TGCCCACTGG TTAACTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48133937	NES12133094	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C	T	C	T	C	T	C	T
ss148475180	ENSMUSSNP1677935	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32171197					SNP	T	T	C	C	T	T	C	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48133937	NES12133094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100308776 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	within coordinates
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	728 bp upstream