rs32172105 SNP Detail

Summary

• ID
  rs32172105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100309160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTGGTTA ACTTTTAAAA
  TCACCTCACT TTCATGCTTG AGAGGCTAAA TCGAGAGTCT CAGGTCACCC TGGGCTACAA
  TTTAACAAGA CTCGGACTTA AAACAAAACA AACAACTCAC ACCGATGACT CAACACTGAC
  ACAGGAGGCC CGCCCACTAG TCACGCCCAC TAGTCACGCC CACTAGTCAA GCCCACTAGT
  Y
  ACGCCCACTA GTCACGCCCA CTAGTTACTC AGAATCTAGT TTTTAAGAGA AACTAAGTTA
  GTCCAGTAGG ACATCCTCTG TGCCATCACT GGGTAGGACC CACTCAAAGG ATCACTCTTG
  GATATGACAC ACAACACAAG AGAACTGGAC AGCCCTGACG GTGTCAGGCT CAAGATGACA
  CTGGCAAGCA GGAAGGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss48133945	NES12133083	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs32172105					SNP	T	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48133945	NES12133083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100309160 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	within coordinates
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	1112 bp upstream