rs32173964 SNP Detail

Summary

• ID
  rs32173964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140427982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCGACTCC TCAGCCTTGA CCCCAGCACC TCTGGCCACT
  TCTCTTCCCG GATTCCTAGA CCCTGCACTG TCCCACGGGG TAGGGGAAAG GTTTCCTCTC
  Y
  CACTTCTGCC AGGTCAGATT CTTTACAATT TTAAAACTCA GCTCTCCCAG GGAACGCCTT
  CCTTGATCCT GGAACCCGGT AAGTACCATG CTTTCAGTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45616035	mCV23725075	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss147709718	ENSMUSSNP569966	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32173964					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140427982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	692 bp distal
Cpgi15195	CpG island 15195	394 bp proximal
Gm69527	predicted gene, 69527	within coordinates
Gm69529	predicted gene, 69529	201 bp downstream
Rcc2	regulator of chromosome condensation 2	within coordinates
Rr377298	regulatory region 377298	within coordinates
Rr603517	regulatory region 603517	788 bp distal
Rr603518	regulatory region 603518	120 bp distal
Rr603519	regulatory region 603519	within coordinates
Rr603520	regulatory region 603520	589 bp proximal
Rr603521	regulatory region 603521	739 bp proximal
Tssr39970	transcription start site region 39970	789 bp downstream
Tssr39971	transcription start site region 39971	716 bp downstream
Tssr39972	transcription start site region 39972	696 bp downstream
Tssr39973	transcription start site region 39973	673 bp downstream
Tssr39974	transcription start site region 39974	325 bp downstream
Tssr39975	transcription start site region 39975	186 bp downstream
Tssr39976	transcription start site region 39976	142 bp downstream
Tssr39977	transcription start site region 39977	58 bp downstream
Tssr39978	transcription start site region 39978	755 bp upstream
Tssr39979	transcription start site region 39979	776 bp upstream
Tssr39980	transcription start site region 39980	795 bp upstream
Tssr39981	transcription start site region 39981	839 bp upstream
Tssr39982	transcription start site region 39982	851 bp upstream
Tssr39983	transcription start site region 39983	937 bp upstream
Tssr39984	transcription start site region 39984	1162 bp upstream
Tssr39985	transcription start site region 39985	1224 bp upstream
Tssr39986	transcription start site region 39986	1265 bp upstream
Tssr39987	transcription start site region 39987	1410 bp upstream
Tssr39988	transcription start site region 39988	1506 bp upstream
Tssr39989	transcription start site region 39989	1545 bp upstream
Tssr44270	transcription start site region 44270	1021 bp upstream
Tssr44271	transcription start site region 44271	988 bp upstream
Tssr44272	transcription start site region 44272	848 bp upstream
Tssr44273	transcription start site region 44273	398 bp downstream
Tssr44274	transcription start site region 44274	1727 bp downstream