rs32174928 SNP Detail

Summary

• ID
  rs32174928
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4876522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTT TGTGTAGTTT GTGGAAGACT
  Y
  TTGGACTCTC AACAGTTTTC TATGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45115048	mCV23845279	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss319612486	CHEV_1_4796380	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32174928					SNP	C	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4876522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9	CpG island 9	1142 bp proximal
Gm37988	predicted gene, 37988	1593 bp upstream
Gm70766	predicted gene, 70766	965 bp downstream
Lypla1	lysophospholipase 1	1524 bp upstream
Rr407434	regulatory region 407434	976 bp proximal
Rr407435	regulatory region 407435	1421 bp proximal
Rr407436	regulatory region 407436	1796 bp proximal
Tssr5801	transcription start site region 5801	1343 bp upstream
Tssr5802	transcription start site region 5802	1567 bp upstream
Tssr5803	transcription start site region 5803	1947 bp upstream
Tssr10888	transcription start site region 10888	1361 bp downstream
Tssr10889	transcription start site region 10889	1419 bp downstream