rs32176316 SNP Detail

Summary

• ID
  rs32176316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100307071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAAAAA GGAGAGAGAG
  AGAGAGCAAG AGAAGGGGGA CGTGAGAGCT TAATGAATGC TCAAAAGGAC AGGGAGAGCC
  CAGCAAGGGC CTGACAAGGA GAGCCCAGCA AGCATCCAAG ATAGCCCACG AAGTCCAAGA
  GTCCATCCAC AGCAGTAACA ATAACAACAA TGAAAATTTG TTTTTCAGCC AGGGTAAAAC
  Y
  GTAGCTCACC TTAAATCCAG CCACTGCTCC AGACTGCAAA TCAGATTCGA TGTTTCCTGG
  GTCTAGGTAG GCAATGCTCA TAAGAAAGCC AGGCCCCGTG AACGCCCAGA GTTTACGAAA
  GCTAAAACAA GAGTACTATA AAGGAGAGAG GAGAGCGGTC TGAGTGTCAC CCGTCCTAAC
  GTCTCTATTT TATCACACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48133899	NES12133121	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	T	T	T	C		T	C	C	T		C
ss148475054	ENSMUSSNP5902723	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss325083093	CHEV_15_100239621	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32176316					SNP	C	C	T	T	C	C	T	T	T	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48133899	NES12133121	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100307071 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	1420 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	969 bp downstream