rs32176318 SNP Detail

Summary

• ID
  rs32176318
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100307120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATGAATG CTCAAAAGGA
  CAGGGAGAGC CCAGCAAGGG CCTGACAAGG AGAGCCCAGC AAGCATCCAA GATAGCCCAC
  GAAGTCCAAG AGTCCATCCA CAGCAGTAAC AATAACAACA ATGAAAATTT GTTTTTCAGC
  CAGGGTAAAA CTGTAGCTCA CCTTAAATCC AGCCACTGCT CCAGACTGCA AATCAGATTC
  R
  ATGTTTCCTG GGTCTAGGTA GGCAATGCTC ATAAGAAAGC CAGGCCCCGT GAACGCCCAG
  AGTTTACGAA AGCTAAAACA AGAGTACTAT AAAGGAGAGA GGAGAGCGGT CTGAGTGTCA
  CCCGTCCTAA CGTCTCTATT TTATCACACA TCACGGAGCG ACCCCAGTGG CACAGGGCCA
  GGGTGGGCTC TGCGCGAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48133901	NES12133123	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32176318					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48133901	NES12133123	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100307120 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr509705	regulatory region 509705			1371 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2			Coding-Synonymous
				mRNA-UTR
				mRNA-UTR
Tssr136419	transcription start site region 136419			920 bp downstream