rs32176797 SNP Detail

Summary

• ID
  rs32176797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19297214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAACAA AAACTGGGAG
  CAGGAATTCC AAAGGCTCGG GATGAACCAG CTGACCAAAC CTGAGCGAGC CTAAGCCACA
  CCTCCAAGGG GTCGATTCCA AAGCTCAGGA TTCATCTGGG CACTTTCGCT TTTCCTTCTC
  AGCTCATTAA AGCCCACTGG CACAGGGACT GAAACCACAG AACGGGATTT GAGGAGGGTC
  R
  AGCACAGCAT TGCCAAGTAG AGAGCTAGGC TGGAACTGGA GGGAGGCTCC AGTGTGAACT
  GATAACTGAG ACCACTGCTA AGGGTAGCTG CTTTCCTCTT CACAGTTGGG GGTTAGCACA
  CTTTGGAGAC TGAGAAGTAC CAAAAGCCCC TATAATTAAT GCAAACCTTC AGTTACATTC
  TGAACTCCAA AAGGCATTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46114208	mCV25052549	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G
ss48163338	NES11822735	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A		G	G	G	G	A		A	A	A	G
ss148478856	ENSMUSSNP6422761	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G											A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32176797					SNP	A	A	G	G	G	A	A	G	G	G	G	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48163338	NES11822735	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19297214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18499	CpG island 18499	480 bp distal
Gemin7	gem nuclear organelle associated protein 7	1660 bp downstream
Ppp1r37	protein phosphatase 1, regulatory subunit 37	213 bp upstream
Rr643188	regulatory region 643188	782 bp distal
Rr643189	regulatory region 643189	within coordinates
Rr643190	regulatory region 643190	1278 bp proximal
Rr643191	regulatory region 643191	1362 bp proximal
Tssr70928	transcription start site region 70928	1123 bp upstream
Tssr70929	transcription start site region 70929	1092 bp upstream
Tssr70930	transcription start site region 70930	1041 bp upstream
Tssr70931	transcription start site region 70931	888 bp upstream
Tssr70932	transcription start site region 70932	852 bp upstream