rs32177110 SNP Detail

Summary

• ID
  rs32177110
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:73603276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGCCTCTGGT TCCTGGGTCT TGAAGGGTTG TTTATTGCCT GCCTCCCTAC CCCCACTTAC
  AATGGAAGTT CTGGACAGCT AGGGACGTGC GTTTGGGCAT TGTGTGAATC TCTTAGTCCC
  ATCTGCTGGC CCTGATCCCA CGTTACCCCA TTGCCACTGT CCTGGCTGCT GTATGGGGGA
  TGAGGACACA GGCTATTGGC TTTGTTCTGC CTCCCAGGTT CCCTGGAAGC AGTCCTGGTC
  TGTAGTAGCT TCATGGGAGT AGAAAAGTGG AAAAGGCATG GTCCTATACT GGAGAAACTC
  W
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CACACACACA CATACACAGC
  AGGATGACAG AGGACAGTAA TCATCTTCTT GGAGCATGTA GCTCTGCATC CTAGAGGTTG
  TGCTGCAGGA AGGTGATTTT CTTCTTACCG GGTAGTCAGG TGGGCTTCTA GGAGGTGGTG
  GCAAATGGTA TGGAGAGAGG GGCTAGTGGG GTGCAGCCCA CGTCACCTGG GCAGGGCTTT
  GCTGAGCCCT TTGGGGTTGG TGGTTAGGCA CTGGTCCAGG GTACCTCTTT AATTCTCAAG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39371498	mCV23352522	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32177110					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73603276 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptp4a3	protein tyrosine phosphatase 4a3			Intron
				Noncoding-Transcript-Variant
Rr369950	regulatory region 369950			1094 bp upstream
Rr504172	regulatory region 504172			1855 bp distal
Rr504173	regulatory region 504173			1129 bp proximal