rs32177143 SNP Detail

Summary

• ID
  rs32177143
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100307907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGATGAA GACCCACAAC
  CATCTGTACA GCTACAGTGT GTGCTCATAT ACACTAAATA AATAAATAAA TAAATAAAAC
  AAACCATGCT CACTAAAGCC ACTCAGCACC CGTGTCTAAA GCCTTCCCAT AATGCAAAAA
  AATGTAGCTG TCAGAGACTG GCTGCCTAAG TGAGACCTGC GGCTGATGAG TGCCGAGAGC
  R
  GAACTTGCCC TTGCTCTCCC CAGGACACAG GGTTCCCTGC ATGGACCGCC ACTGACCTCC
  TCCTCAGGAA TGGGGATTTT CTCATCAAAG TAGGTGGTGA AGGGCTCCTC AGAGTCTCCA
  GTGGAATGTG GGAGGGATGA GTTGCTGTAG GCAGGGTTGA TGGCGCCAAG GCTGGCAGAG
  TCTCCATGGT CCCCAGAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48133917	NES12133108	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G	G	G	A	G	A	G	A
ss148475131	ENSMUSSNP5627666	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32177143					SNP	A	A	G	G	A	G	G	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48133917	NES12133108	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100307907 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	584 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	133 bp downstream