rs32177965 SNP Detail

Summary

• ID
  rs32177965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100307941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGTGTGC TCATATACAC
  TAAATAAATA AATAAATAAA TAAAACAAAC CATGCTCACT AAAGCCACTC AGCACCCGTG
  TCTAAAGCCT TCCCATAATG CAAAAAAATG TAGCTGTCAG AGACTGGCTG CCTAAGTGAG
  ACCTGCGGCT GATGAGTGCC GAGAGCGGAA CTTGCCCTTG CTCTCCCCAG GACACAGGGT
  Y
  CCCTGCATGG ACCGCCACTG ACCTCCTCCT CAGGAATGGG GATTTTCTCA TCAAAGTAGG
  TGGTGAAGGG CTCCTCAGAG TCTCCAGTGG AATGTGGGAG GGATGAGTTG CTGTAGGCAG
  GGTTGATGGC GCCAAGGCTG GCAGAGTCTC CATGGTCCCC AGAAGCGCCA TCTGAGTCAA
  CATAACAAAC CCACCAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ
ss48133919	NES12133109	PERLEGEN	MM_PANEL2	f	SNP		T	T	C	T	C	T	C	T
ss148475139	ENSMUSSNP4262021	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ
rs32177965					SNP	C	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48133919	NES12133109	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100307941 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	550 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	99 bp downstream