rs32177967 SNP Detail

Summary

• ID
  rs32177967
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100308144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATGGAC CGCCACTGAC
  CTCCTCCTCA GGAATGGGGA TTTTCTCATC AAAGTAGGTG GTGAAGGGCT CCTCAGAGTC
  TCCAGTGGAA TGTGGGAGGG ATGAGTTGCT GTAGGCAGGG TTGATGGCGC CAAGGCTGGC
  AGAGTCTCCA TGGTCCCCAG AAGCGCCATC TGAGTCAACA TAACAAACCC ACCAAGGAGC
  W
  TTCTCAGTGA CGCTGAACTC CAGCCCTTCA CCCTGATGGA CACCTGACCC GCATCTGGTA
  CTCGCTCCCT CCCCGTCACT GACAACAACC TTAGGCCCAA AGCTAAATCA TCTTACAGCT
  CTGTGCACAA GAGACCACCG TGGTTTTAGT ACAGTGTGCC CTAAACAGTT TATTCATCAA
  CATTGTAAAT AAATGTATGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48133921	NES12133110	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	A	A	T	T	T	T	A	T	A
ss148475154	ENSMUSSNP2131385	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32177967					SNP	A	A	T	T	A	A	T	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48133921	NES12133110	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100308144 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	347 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	96 bp upstream