rs32179204 SNP Detail

Summary

• ID
  rs32179204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142416911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACCCTGG CCTTATTCAG
  AAACCGTAGA GACAGAATTG GTGAGTGTAA AGGGACATTT GAAAGAGCTG TGTGCACAAC
  ACGTCCCTCC TCTGTGCTAA GGTCCGGTCC TCTCTGCTCC TCTCATCAGT ACAGAGGATG
  AAGGGCTCAT CCTTTGAGCT GCGTCTGAGG GCGTCTAAAC AGAGGAGCCC TCTGCTGACT
  Y
  TCCTTTTACG TATTTCCTAA ATGTGTACTG GGGGAACTTT GAACAGTCAG AATAAGGCGG
  AAGCCAGGAC AGAGTGCAAA TACAATCCTG CGTATGTGTG TGTACACAAG ATGCACGTGG
  CACACGTGTG GGTACATGTT CCCGTGGGTG CATGTGTGAG AGCATGTGCA CACACACATA
  TAGGCCAGAG GTCACCAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss48134324	NES11822674	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C		C	C	T
ss322044821	CHEV_6_142419705	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs32179204					SNP	T	T	T	T	T	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134324	NES11822674	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142416911 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Tssr63950	transcription start site region 63950	1613 bp downstream
Tssr63951	transcription start site region 63951	1628 bp downstream
Tssr63952	transcription start site region 63952	1659 bp downstream
Tssr63953	transcription start site region 63953	1712 bp downstream
Tssr63954	transcription start site region 63954	1775 bp downstream
Tssr63955	transcription start site region 63955	1804 bp downstream
Tssr63956	transcription start site region 63956	1890 bp downstream