rs32179208 SNP Detail

Summary

• ID
  rs32179208
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142417005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGACTTTCC TTTTACGTAT TTCCTAAATG TGTACTGGGG
  GAACTTTGAA CAGTCAGAAT AAGGCGGAAG CCAGGACAGA GTGCAAATAC AATCCTGCGT
  R
  TGTGTGTGTA CACAAGATGC ACGTGGCACA CGTGTGGGTA CATGTTCCCG TGGGTGCATG
  TGTGAGAGCA TGTGCACACA CACATATAGG CCAGAGGTCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss48134328	NES11822676	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs32179208					SNP	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134328	NES11822676	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142417005 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Rr640648	regulatory region 640648	1464 bp distal
Rr640649	regulatory region 640649	within coordinates
Rr640650	regulatory region 640650	1508 bp proximal
Rr640651	regulatory region 640651	1820 bp proximal
Tssr63950	transcription start site region 63950	1519 bp downstream
Tssr63951	transcription start site region 63951	1534 bp downstream
Tssr63952	transcription start site region 63952	1565 bp downstream
Tssr63953	transcription start site region 63953	1618 bp downstream
Tssr63954	transcription start site region 63954	1681 bp downstream
Tssr63955	transcription start site region 63955	1710 bp downstream
Tssr63956	transcription start site region 63956	1796 bp downstream