rs32179438 SNP Detail

Summary

• ID
  rs32179438
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:142417545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC CTGTTAATAT TCCCTTGAGA
  K
  TTTTAAAACA AGCATAATGG CACAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48134338	NES11822627	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	G	T	G	G		G	T	G		G
ss322044824	CHEV_6_142420339	CHEVERUD	SCREENING_POP	f	SNP											T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32179438					SNP	T	T	T	T	G	T	G	T	G	G	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134338	NES11822627	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142417545 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	Intron
Rr640649	regulatory region 640649	267 bp distal
Rr640650	regulatory region 640650	968 bp proximal
Rr640651	regulatory region 640651	1280 bp proximal
Tssr63950	transcription start site region 63950	979 bp downstream
Tssr63951	transcription start site region 63951	994 bp downstream
Tssr63952	transcription start site region 63952	1025 bp downstream
Tssr63953	transcription start site region 63953	1078 bp downstream
Tssr63954	transcription start site region 63954	1141 bp downstream
Tssr63955	transcription start site region 63955	1170 bp downstream
Tssr63956	transcription start site region 63956	1256 bp downstream