rs32179442 SNP Detail

Summary

• ID
  rs32179442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142417712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCTATT CACCTGTTAA
  TATTCCCTTG AGATTTTTAA AACAAGCATA ATGGCACACA CTTTTTAATC CCAGCACTTG
  AATCTGTAAT TTTCCAGGCC AACCATAACT AAACTGTGAG TTCATGTGTC AACATCCTAA
  AACTGGAAGA TAAATCTCTA AGAGTTGATT TTCACATAGC CTTATAAATA CCTCTATTAG
  R
  AAAATCACTT AGGTTGCCTC ATCCATCTTT CATTTTCAAA AGCACATTTT CTATATATGC
  ATAGCATTGG AGAAAGATTC ATTTTAATAT TTCTCAGTAG AACACAATTT AAATGAAACT
  CTAACTTCAA TCTTATCTTG AATTCTTAGA AGCATTAAAC ACTAATAGCA TGAAGAGGTA
  ACATTTCTGA TTAGTCCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48134342	NES11822632	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G		A	G	A	A		A
ss322044827	CHEV_6_142420506	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32179442					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134342	NES11822632	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142417712 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Tssr63950	transcription start site region 63950	812 bp downstream
Tssr63951	transcription start site region 63951	827 bp downstream
Tssr63952	transcription start site region 63952	858 bp downstream
Tssr63953	transcription start site region 63953	911 bp downstream
Tssr63954	transcription start site region 63954	974 bp downstream
Tssr63955	transcription start site region 63955	1003 bp downstream
Tssr63956	transcription start site region 63956	1089 bp downstream