rs32179461 SNP Detail

Summary

• ID
  rs32179461
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141265308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCCGCT CCGCCCAGCC
  GCGCAGAGAG CTGAAGCATC CGCCGCTGCA CGAATCTCCG GAGAGCGGCC ACTGCTCCGG
  GTGCCTGCCA CCTCCCGGTG CCGCACGATG CCAAGCGCGG CTGCGGCGTC CGCACAGCCC
  GGGCTCTGCG GGCGCTCGGG GCCCCGGCCA GTCGCGCTGG ACTGCGAGGC GGCGCGCAAA
  R
  AGGCGATCCC GCAGCCCCCC AGCGCTCCCG CTCCTTCGGT GGCCGCACAG CAGCCGCCCG
  CCCAGAGCGC CGGAGCCAGC CGCGCGTCGC CGCTCTGCCG GTGGCCAGCA ACGGGCCGGA
  GAGGCGCCCG AGGTGCCAGC GCGGCTCCGG GCCTCGTGTC ACTCACCGTT TGAAATGCTC
  GATGATCTTC TCTTCCCGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45616719	mCV22794018	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss321387948	CHEV_4_141093912	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32179461					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141265308 () rs orientation: forward

Symbol	Name	Function Class
B830004H01Rik	RIKEN cDNA B830004H01 gene	1212 bp upstream
Cpgi15233	CpG island 15233	790 bp distal
Cpgi15234	CpG island 15234	within coordinates
Gm4123	predicted gene 4123	580 bp downstream
Gm68462	predicted gene, 68462	1093 bp downstream
Rr1207	regulatory region 1207	138 bp distal
Rr603788	regulatory region 603788	1192 bp distal
Rr603789	regulatory region 603789	442 bp proximal
Spen	spen family transcription repressor	within coordinates
Tssr44321	transcription start site region 44321	437 bp downstream
Tssr44322	transcription start site region 44322	565 bp downstream