rs32180104 SNP Detail

Summary

• ID
  rs32180104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142417740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCA CTTAGGTTGC CTCATCCATC
  Y
  TTCATTTTCA AAAGCACATT TTCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss48134344	NES11822635	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs32180104					SNP	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134344	NES11822635	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142417740 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Rr640649	regulatory region 640649	462 bp distal
Rr640650	regulatory region 640650	773 bp proximal
Rr640651	regulatory region 640651	1085 bp proximal
Tssr63950	transcription start site region 63950	784 bp downstream
Tssr63951	transcription start site region 63951	799 bp downstream
Tssr63952	transcription start site region 63952	830 bp downstream
Tssr63953	transcription start site region 63953	883 bp downstream
Tssr63954	transcription start site region 63954	946 bp downstream
Tssr63955	transcription start site region 63955	975 bp downstream
Tssr63956	transcription start site region 63956	1061 bp downstream