rs32180108 SNP Detail

Summary

• ID
  rs32180108
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142417887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCCTTAT AAATACCTCT
  ATTAGAAAAA TCACTTAGGT TGCCTCATCC ATCTTTCATT TTCAAAAGCA CATTTTCTAT
  ATATGCATAG CATTGGAGAA AGATTCATTT TAATATTTCT CAGTAGAACA CAATTTAAAT
  GAAACTCTAA CTTCAATCTT ATCTTGAATT CTTAGAAGCA TTAAACACTA ATAGCATGAA
  R
  AGGTAACATT TCTGATTAGT CCTGACCACA TATAGCTTTT CCTCTAAGAA AAGAATTTCT
  TAATTTGCTT CTTATTTATA AGGAAAATGC TCAGACAAAA CAATAACTTG CCCCTTGGTC
  TTGCAAACTT TATATGCCCC AGTATAGGGG AACACCAGGG CCAAGAAGTG GGAGTGGGTG
  GGTAGGGGAG AGGGGTGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48134348	NES11822638	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32180108					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134348	NES11822638	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142417887 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Rr640649	regulatory region 640649	609 bp distal
Rr640650	regulatory region 640650	626 bp proximal
Rr640651	regulatory region 640651	938 bp proximal
Tssr63950	transcription start site region 63950	637 bp downstream
Tssr63951	transcription start site region 63951	652 bp downstream
Tssr63952	transcription start site region 63952	683 bp downstream
Tssr63953	transcription start site region 63953	736 bp downstream
Tssr63954	transcription start site region 63954	799 bp downstream
Tssr63955	transcription start site region 63955	828 bp downstream
Tssr63956	transcription start site region 63956	914 bp downstream