rs32180112 SNP Detail

Summary

• ID
  rs32180112
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142418167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAAATG CTCAGACAAA
  ACAATAACTT GCCCCTTGGT CTTGCAAACT TTATATGCCC CAGTATAGGG GAACACCAGG
  GCCAAGAAGT GGGAGTGGGT GGGTAGGGGA GAGGGGTGGG GGGAGGGTAT AGGGGACTTT
  CGGGATAACA TTTGAAATGT AAATGAAGAA AATACCTAAT ACAAAATTAG AAAAAGTTTT
  W
  AAAAATTCCT ACTTGGCCAT GACATTCATT TACATTTCTA ACATTAACAA GCCTATTCAG
  CCACTCACTA CCCTTTTGGA TTCTCTCCCT CTTCACCCCA CATATAAGTT TATGTTTTCA
  TTGCCTGTTG GAAAGAGTTT TATGACCTAC AGACACCTTC AGAGCCAATG CTGCCCCATC
  ACCACTGGAG TCCCCTATGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48134352	NES11822535	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32180112					SNP	A	A	A	A	A	A	A	A	A	T	T	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134352	NES11822535	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142418167 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Tssr63950	transcription start site region 63950	357 bp downstream
Tssr63951	transcription start site region 63951	372 bp downstream
Tssr63952	transcription start site region 63952	403 bp downstream
Tssr63953	transcription start site region 63953	456 bp downstream
Tssr63954	transcription start site region 63954	519 bp downstream
Tssr63955	transcription start site region 63955	548 bp downstream
Tssr63956	transcription start site region 63956	634 bp downstream