rs32180973 SNP Detail

Summary

• ID
  rs32180973
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136013134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGTAGTTCTC AGTATCCAGA AAGCGAGAGC TTCAGGCGGT GTTGGGAGTC CGTGGGCGGG
  GCCCAAAGTT CCATCCCGGC CAGGGAGTCT CCCAAGGGAG GGAAAAGAAG CCTTTTCCCG
  CTCTGGCCTG GGCTGTCAAA TGAGGGGTGA TCTCAGCTGA GGTCAGCCCG AGCTTCCACA
  CTCAATCTAA CCTCGCGGAT AATATATGAC TCAAAGATGG TCGTAGGGCC ATGAGAAAAA
  AAAAAACACA GACGCTTCCT TTGCTGAGTC GTGCTGTGGT TTCCGAGAAA AAAGTATGTG
  K
  GGGGGTATTC TCACTGGTCT TGAAGGTCGC GGTCCTGTCT CTTCCCTTTT GTTCTTTTCC
  CTCCCCTGCT CTTGGCTGCT AAGTGGCCTT TGTACGCCAG AGTGAAACTC CAAGTCCCGT
  CAGGCCGCGA GGTGCGCGCA CGCGTGATGG AGCTACCCGG CCACGCCGCA GGAGGAGGGC
  TGATGGTTTG GCTTCTGATT GGTCAGATAT TTTACGATTT CTTTTCGCTG ATTGGCTGGG
  ATTGCTGCCG GAAAGGTCCC AGCCCGGAGA TGGCAGAGCA GAGGCGTTCT ATGGGCTGGG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45617112	mCV25110902	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32180973					SNP	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136013134 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15107	CpG island 15107			within coordinates
Rr398613	regulatory region 398613			277 bp downstream
Rr602340	regulatory region 602340			1247 bp distal
Rr602341	regulatory region 602341			within coordinates
Rr602342	regulatory region 602342			255 bp proximal
Tssr39694	transcription start site region 39694			1171 bp downstream
Tssr39695	transcription start site region 39695			1137 bp downstream
Tssr39696	transcription start site region 39696			1106 bp downstream
Tssr39697	transcription start site region 39697			238 bp upstream
Tssr39698	transcription start site region 39698			292 bp upstream
Tssr39699	transcription start site region 39699			355 bp upstream
Zfp46	zinc finger protein 46			Intron
				Noncoding-Transcript-Variant