rs32181058 SNP Detail

Summary

• ID
  rs32181058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142418206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGCAAAC TTTATATGCC
  CCAGTATAGG GGAACACCAG GGCCAAGAAG TGGGAGTGGG TGGGTAGGGG AGAGGGGTGG
  GGGGAGGGTA TAGGGGACTT TCGGGATAAC ATTTGAAATG TAAATGAAGA AAATACCTAA
  TACAAAATTA GAAAAAGTTT TAAAAAATTC CTACTTGGCC ATGACATTCA TTTACATTTC
  Y
  AACATTAACA AGCCTATTCA GCCACTCACT ACCCTTTTGG ATTCTCTCCC TCTTCACCCC
  ACATATAAGT TTATGTTTTC ATTGCCTGTT GGAAAGAGTT TTATGACCTA CAGACACCTT
  CAGAGCCAAT GCTGCCCCAT CACCACTGGA GTCCCCTATG TCTCTGGCCC ACCATGGCCA
  GTGTTGCAAG TAGTACAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48134358	NES11822542	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32181058					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134358	NES11822542	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142418206 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Rr640649	regulatory region 640649	928 bp distal
Rr640650	regulatory region 640650	307 bp proximal
Rr640651	regulatory region 640651	619 bp proximal
Tssr63950	transcription start site region 63950	318 bp downstream
Tssr63951	transcription start site region 63951	333 bp downstream
Tssr63952	transcription start site region 63952	364 bp downstream
Tssr63953	transcription start site region 63953	417 bp downstream
Tssr63954	transcription start site region 63954	480 bp downstream
Tssr63955	transcription start site region 63955	509 bp downstream
Tssr63956	transcription start site region 63956	595 bp downstream