rs32181265 SNP Detail

Summary

• ID
  rs32181265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150531622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTCTTGT TGTCTCTTGT
  GTGCTGTCTG TCCACATGGT CCACCCCCAC TGCAGGTTAG TTGTTTTCTC TGCCAGCCTG
  GCTTTAGAAT GTGGGTGTGT TTTGGTTGGT GGAGTCAGTC AATGCAGGTG GAGGAATGCA
  GCAGACTGGC CCCTGTATAT CCTATCTTAG TAATTTAGAG TGTACATTTA AAATATCCAA
  Y
  CTGCTTTTTT AGACTATTAT TTTAACTGGG TAGACACATC ACCCACTCAC ATTTACAGAG
  GACTGAGAGC AAGGCACTTG CTCAGCCAGG CATCCATCTA TTTACTACTT GGATGAAGTG
  GCACTTCCTC TGCTCGCGCC TAAGGAAATA GGATTCCCTT CATGGTGTCA GAGCAAGAAG
  TTGAGTTTTG TAGAAGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45616905	mCV24963621	ABI	CRAMUS_MOUSE	f	SNP		T					C		C
ss46714821	NES11012779	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	C		C	C	C	C	C	C	C	C	C
ss148053399	ENSMUSSNP2191625	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32181265					SNP	T	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46714821	NES11012779	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150531622 () rs orientation: forward

Symbol	Name	Function Class
Gm52709	predicted gene, 52709	within coordinates
Rere	arginine glutamic acid dipeptide (RE) repeats	Intron
Rr377422	regulatory region 377422	within coordinates
Rr605301	regulatory region 605301	82 bp distal
Rr605302	regulatory region 605302	414 bp proximal