rs32181989 SNP Detail

Summary

• ID
  rs32181989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142418597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTACAAAC CTTTGTTGGT
  CACCTCCCAA GAAACTTCAA AAAGCAGTAA GTCTTCCACA GGGAGTCTTT CAGCTTCCCA
  CACAGGGAGC CCACCAAGGG ATGTCACCGA CAAGGAGCGG CCTCTGAGCA TTCTTCTTCC
  AGCTGTGTGG TGCCGTTTGG GACCTGATTC AGCTGACTGC AGTCAGCACT GAGAAAAAGC
  R
  GCAGCCTTGG GATAGCCTCT ACAGGGTGAG CCAGCAATCT GAGGTCACAT GAACCCAGCG
  CAGCTGGATG AAGCGTGCCC AGCTCCTTGC TGCCTTTCAG GAGAGGGCAG TGCCTCACAG
  TTATAATCCA CACAGACACC CAAAAACAAA AAAAACAAGA CAAAACAAAA CAAAAAATCG
  CAGCTGAAAC CTGACTATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48134370	NES11822553	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G		G	G	A	A		A
ss322044838	CHEV_6_142421391	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32181989					SNP	A	A	A	A	A	A	G	A	A	G	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134370	NES11822553	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142418597 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Rr640649	regulatory region 640649	1319 bp distal
Rr640650	regulatory region 640650	within coordinates
Rr640651	regulatory region 640651	228 bp proximal
Tssr63950	transcription start site region 63950	66 bp upstream
Tssr63951	transcription start site region 63951	31 bp upstream
Tssr63952	transcription start site region 63952	within coordinates
Tssr63953	transcription start site region 63953	26 bp downstream
Tssr63954	transcription start site region 63954	89 bp downstream
Tssr63955	transcription start site region 63955	118 bp downstream
Tssr63956	transcription start site region 63956	204 bp downstream