rs32181991 SNP Detail

Summary

• ID
  rs32181991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142418630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCAAAAA GCAGTAAGTC
  TTCCACAGGG AGTCTTTCAG CTTCCCACAC AGGGAGCCCA CCAAGGGATG TCACCGACAA
  GGAGCGGCCT CTGAGCATTC TTCTTCCAGC TGTGTGGTGC CGTTTGGGAC CTGATTCAGC
  TGACTGCAGT CAGCACTGAG AAAAAGCAGC AGCCTTGGGA TAGCCTCTAC AGGGTGAGCC
  R
  GCAATCTGAG GTCACATGAA CCCAGCGCAG CTGGATGAAG CGTGCCCAGC TCCTTGCTGC
  CTTTCAGGAG AGGGCAGTGC CTCACAGTTA TAATCCACAC AGACACCCAA AAACAAAAAA
  AACAAGACAA AACAAAACAA AAAATCGCAG CTGAAACCTG ACTATTCACA GCAGGGCAGG
  TAGCCAGAGG ACAGACTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48134372	NES11822555	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32181991					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134372	NES11822555	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142418630 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Rr640649	regulatory region 640649	1352 bp distal
Rr640650	regulatory region 640650	within coordinates
Rr640651	regulatory region 640651	195 bp proximal
Tssr63950	transcription start site region 63950	99 bp upstream
Tssr63951	transcription start site region 63951	64 bp upstream
Tssr63952	transcription start site region 63952	22 bp upstream
Tssr63953	transcription start site region 63953	within coordinates
Tssr63954	transcription start site region 63954	56 bp downstream
Tssr63955	transcription start site region 63955	85 bp downstream
Tssr63956	transcription start site region 63956	171 bp downstream