rs32182887 SNP Detail

Summary

• ID
  rs32182887
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142418928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGACACC CAAAAACAAA
  AAAAACAAGA CAAAACAAAA CAAAAAATCG CAGCTGAAAC CTGACTATTC ACAGCAGGGC
  AGGTAGCCAG AGGACAGACT GAGCATGACA AGAGTCCAGT CCTTTGGCCT TTGGCCTTTA
  GACCAAACTC CTACACTCTC TGGATGCTTA TTTTGTCATT GGCAGAAGCA CAAGCAGGAG
  W
  TTCCCTCAGA CACAAGCAGT TTTCCACAGA CTGCACGGTG GTGCCTAGAG TCTACCCCAG
  CCTGTGCCTA GCTGTGCTCT TCCCTCTGCC TCTCCTTATC TAGAACTCTG AGTTTTATTC
  CCACTTATTT TATTCTAAAT GTACAAGCTG GATTGTGGTG AGAGGCCAGA TCTCGATTCT
  CCTTAAATGC TGTACTTTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48134378	NES11822559	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A		A	A	T	T		T
ss322044841	CHEV_6_142421722	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32182887					SNP	T	T	T	T	T	T	A	T	T	A	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134378	NES11822559	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142418928 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	93 bp upstream
Rr640649	regulatory region 640649	1650 bp distal
Rr640650	regulatory region 640650	104 bp distal
Rr640651	regulatory region 640651	within coordinates
Tssr63950	transcription start site region 63950	397 bp upstream
Tssr63951	transcription start site region 63951	362 bp upstream
Tssr63952	transcription start site region 63952	320 bp upstream
Tssr63953	transcription start site region 63953	286 bp upstream
Tssr63954	transcription start site region 63954	217 bp upstream
Tssr63955	transcription start site region 63955	205 bp upstream
Tssr63956	transcription start site region 63956	87 bp upstream