rs32182889 SNP Detail

Summary

• ID
  rs32182889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142418964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAA GCAGTTTTCC ACAGACTGCA
  Y
  GGTGGTGCCT AGAGTCTACC CCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48134380	NES11822560	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	T	T		T	T	C	T		T
ss322044842	CHEV_6_142421758	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32182889					SNP	C	C	C	C	T	C	T	C	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134380	NES11822560	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142418964 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	129 bp upstream
Tssr63950	transcription start site region 63950	433 bp upstream
Tssr63951	transcription start site region 63951	398 bp upstream
Tssr63952	transcription start site region 63952	356 bp upstream
Tssr63953	transcription start site region 63953	322 bp upstream
Tssr63954	transcription start site region 63954	253 bp upstream
Tssr63955	transcription start site region 63955	241 bp upstream
Tssr63956	transcription start site region 63956	123 bp upstream