rs32182891 SNP Detail

Summary

• ID
  rs32182891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142419002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCAGGT AGCCAGAGGA
  CAGACTGAGC ATGACAAGAG TCCAGTCCTT TGGCCTTTGG CCTTTAGACC AAACTCCTAC
  ACTCTCTGGA TGCTTATTTT GTCATTGGCA GAAGCACAAG CAGGAGTTTC CCTCAGACAC
  AAGCAGTTTT CCACAGACTG CACGGTGGTG CCTAGAGTCT ACCCCAGCCT GTGCCTAGCT
  R
  TGCTCTTCCC TCTGCCTCTC CTTATCTAGA ACTCTGAGTT TTATTCCCAC TTATTTTATT
  CTAAATGTAC AAGCTGGATT GTGGTGAGAG GCCAGATCTC GATTCTCCTT AAATGCTGTA
  CTTTTTTGGT ATACAAAGGC ATAAACCACG GTGTCTTTCT GCATAGCACA TAAAGAATGT
  GTCATTTTGG TTGATTGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48134382	NES11822561	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		G	A	G	G		G
ss322044843	CHEV_6_142421796	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32182891					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134382	NES11822561	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142419002 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	167 bp upstream
Rr640649	regulatory region 640649	1724 bp distal
Rr640650	regulatory region 640650	178 bp distal
Rr640651	regulatory region 640651	within coordinates
Tssr63950	transcription start site region 63950	471 bp upstream
Tssr63951	transcription start site region 63951	436 bp upstream
Tssr63952	transcription start site region 63952	394 bp upstream
Tssr63953	transcription start site region 63953	360 bp upstream
Tssr63954	transcription start site region 63954	291 bp upstream
Tssr63955	transcription start site region 63955	279 bp upstream
Tssr63956	transcription start site region 63956	161 bp upstream