rs32182893 SNP Detail

Summary

• ID
  rs32182893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142419041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCAGTCCT TTGGCCTTTG
  GCCTTTAGAC CAAACTCCTA CACTCTCTGG ATGCTTATTT TGTCATTGGC AGAAGCACAA
  GCAGGAGTTT CCCTCAGACA CAAGCAGTTT TCCACAGACT GCACGGTGGT GCCTAGAGTC
  TACCCCAGCC TGTGCCTAGC TGTGCTCTTC CCTCTGCCTC TCCTTATCTA GAACTCTGAG
  Y
  TTTATTCCCA CTTATTTTAT TCTAAATGTA CAAGCTGGAT TGTGGTGAGA GGCCAGATCT
  CGATTCTCCT TAAATGCTGT ACTTTTTTGG TATACAAAGG CATAAACCAC GGTGTCTTTC
  TGCATAGCAC ATAAAGAATG TGTCATTTTG GTTGATTGGT TGATTGTCAA TCCCTATCTT
  AATGGCTAAA GAGAAATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48134384	NES11822562	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	C	T	T		T
ss322044844	CHEV_6_142421835	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32182893					SNP	T	T	T	T	T	T	C	T	T	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48134384	NES11822562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142419041 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	206 bp upstream
Rr640649	regulatory region 640649	1763 bp distal
Rr640650	regulatory region 640650	217 bp distal
Rr640651	regulatory region 640651	1 bp distal
Tssr63950	transcription start site region 63950	510 bp upstream
Tssr63951	transcription start site region 63951	475 bp upstream
Tssr63952	transcription start site region 63952	433 bp upstream
Tssr63953	transcription start site region 63953	399 bp upstream
Tssr63954	transcription start site region 63954	330 bp upstream
Tssr63955	transcription start site region 63955	318 bp upstream
Tssr63956	transcription start site region 63956	200 bp upstream