rs32189342 SNP Detail

Summary

• ID
  rs32189342
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:79771459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAATATTCA GTGGTAGATG TTAAAAATGT TATTTGTCAT
  TAACATAAAC CTTCTTATCA CTAGCATGGG CACCAGGTTT GGTGGGCACA GAAGAAATTA
  S
  AGGCTCTGGT TCTTTCCAGG AGAGGTTTGC CCTACTGATT TCTGATTCCT ACATACTGGC
  TTTCAGACAA CGGTCACTGA AACATTTATT CAGTTGAATT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49323048	NES12597681	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32189342					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49323048	NES12597681	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79771459 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Elf1	E74 like ETS transcription factor 1			Intron
				Noncoding-Transcript-Variant
Rr496133	regulatory region 496133			1298 bp distal
Rr496134	regulatory region 496134			204 bp distal
Rr496135	regulatory region 496135			1297 bp proximal
Tssr126804	transcription start site region 126804			1516 bp upstream
Tssr126805	transcription start site region 126805			1558 bp upstream
Tssr126806	transcription start site region 126806			1577 bp upstream
Tssr126807	transcription start site region 126807			1621 bp upstream
Tssr126808	transcription start site region 126808			1743 bp upstream
Tssr129915	transcription start site region 129915			1656 bp downstream