rs32189930 SNP Detail

Summary

• ID
  rs32189930
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:79770363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTATATA GCCCAGGCTG
  GCCCCAAATT CCTGCCTGCA ATTTCAGGCT TGTGCCATCA TGTCTATTAT TAAACAAGCT
  TAAAATCTGT GAGGCTTTTA GGTTGACTTA GGGTAGATCA GATGCTTTGT TTTCTGACTT
  GACAGCCATG TCTTTTTGTG TATAGGGAAG ATCATGATCT GTTTGGACAT TTTAGACAGA
  M
  GGACTCAGAG CTTCTTGAGA TGAACTTGAC TGACGTGTAC TGACTGGATT CGGGGGTGGG
  GAACCCTAGA AAGTGGAGTT CCCCCTTAAA TTTGACATAA ACATTTACTT AAGTCTGTAT
  TTGAAACTGT GTAATAGCAC AAAGGTCTAG GTAGATTTAA AAGCAAGTCT ATGTGTTTTA
  TAGTGATTAA GTTTTGATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49323056	NES12597677	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32189930					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49323056	NES12597677	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79770363 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Elf1	E74 like ETS transcription factor 1			Intron
				Noncoding-Transcript-Variant
Rr496131	regulatory region 496131			1920 bp distal
Rr496133	regulatory region 496133			202 bp distal
Rr496134	regulatory region 496134			336 bp proximal