rs32190346 SNP Detail

Summary

• ID
  rs32190346
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:79769825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCCCAGG CACACATATC
  TCACGGATGC TTTGCCCAGC TCTAGACTTT GTCGTCATTT ATTGTGCTCA TGAACAGAAG
  GAGAGCACTA GAGTATATGT AGAGTATACG TGTATGGAAG CCTAACTCAG GGCCGCACCG
  CAGAGGCGGA GCCCAAGTGG TCTGAGGTTA GAGTTCAGCA GAAATGTTTT GTTTTAGGAC
  K
  TAACCTCAAT GTGAAGATTG GTGGTGAGAA CTTAGGAATC TTAATTCTAA GCATTTCTGT
  GCTATAGTTC CCCAAAGGAA AAGGGCCTGA GAGATAGTCT GGGAATTGTT TGGATGCCCA
  GAACTGGGTT ACTTCTCTAA AATGTGTCCA TAAGGTGCCA GCATGTGACT GGTAGAGGAA
  GAGCTTTCTC CTTCTTTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49323062	NES12597674	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32190346					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49323062	NES12597674	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:79769825 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Elf1	E74 like ETS transcription factor 1			Intron
				Noncoding-Transcript-Variant
Rr496131	regulatory region 496131			1382 bp distal
Rr496133	regulatory region 496133			within coordinates
Rr496134	regulatory region 496134			874 bp proximal
Tssr126802	transcription start site region 126802			1698 bp downstream
Tssr126803	transcription start site region 126803			1678 bp downstream